Does BAPCo optimize the applications it uses in SYSmark or MobileMark?

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No, BAPCo does not optimize any applications. All the applications used in BAPCo benchmarks come directly from the application vendors. The performance of those applications will represent the performance users will see in the real world.

Does BAPCo use any optimization when compiling the benchmarking software?
Who makes the decisions on which scenarios should be included in BAPCo benchmarks?